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A plain matrix of OTU/ASV counts with ASVs as rows and samples as columns, subset to the samples present in example_microbiome. Used as input for create_grouped_matrix() and build_dendrogram().

Usage

em_otu

Format

A numeric matrix with ASV identifiers as row names and sample identifiers as column names.

@source Caporaso, J.G., et al. (2011). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. PNAS, 108, 4516–4522. Available via phyloseq::GlobalPatterns.